PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139025.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 259aa    MW: 29373.1 Da    PI: 7.5537
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-202677156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g+
  XP_009139025.1 26 CRYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDKAALKLFGH 77
                    78*****999.**********965...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.73E-302686No hitNo description
PfamPF008471.5E-132677IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-222785IPR016177DNA-binding domain
SMARTSM003805.0E-352790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-292785IPR001471AP2/ERF domain
PROSITE profilePS5103223.2222784IPR001471AP2/ERF domain
PRINTSPR003672.9E-102839IPR001471AP2/ERF domain
PRINTSPR003672.9E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEKPSSMKQW KKGPARGKGG PQNALCRYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDKA ALKLFGHDAY LNLPHLQRKQ GPSVNNTQRF KWVPSKKFIS MFPSRGLLNV  120
NAQPSLHIIQ QRLDELKRNG LLSQSYSSSP SSASFLDEQK KPEMDLNEFL QQMGILKDKS  180
QAEASEVAVS HYTPPWKEQE ESGGPFTDQS LSWETMIDEM PGSETSAMHF DCSNFGSYDD  240
LEDDLGFPSI WNFCGSLDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-182884360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139025.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894690.0AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139025.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
RefseqXP_013675410.10.0dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX51e-137DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A3P6C5Q80.0A0A3P6C5Q8_BRACM; Uncharacterized protein
TrEMBLM4DDP90.0M4DDP9_BRARP; Uncharacterized protein
STRINGBra014617.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-127ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]