PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009139071.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 269aa MW: 29742.5 Da PI: 9.5734

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009139071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.3	1e-15	199	241	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++++r++kNRe+A rsR+RK+a+++eLe kv Le+eN++L+ XP_009139071.1 199 RKQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERLRR 241 689**************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.0E-14	192	242	No hit	No description
SMART	SM00338	1.6E-12	195	267	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.473	197	242	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-12	199	242	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.24E-23	199	253	No hit	No description
SuperFamily	SSF57959	1.31E-10	199	244	No hit	No description
PROSITE pattern	PS00036	0	202	217	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDSQREPKSH SLNRQGSSLY SLTLDEVQTH LGGSGKALGS MNLDELLKSV CSVDSNGDTT 60 QEGGGGLSRQ GSLTLPRDLS KKTVEEVWKD IQQNTNGGSN NAHKEPTLGE MTLEDLLLKA 120 GVVTETVTGL GQNIPQAGPW VQYHQLPSML QGQSFMPYPV ADMQAMVSQT SLMGGLYDTQ 180 TPGRKRVASG EVVEKTVERK QKRMIKNRES AARSRARKQA YTQELEIKVS RLEEENERLR 240 RQKEVEKILP SAPPPDPKRQ LRRTSSAPF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009139071.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139071.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-154	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A3P6C8Y7	0.0	A0A3P6C8Y7_BRACM; Uncharacterized protein
STRING	Bra014668.1-P	1e-167	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-146	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]