PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139189.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 217aa    MW: 24186.4 Da    PI: 8.3199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.9e-104493253
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                    +  h  +Er+RR+++ + f+ Lr++lP       ++K   ++ +  Av++Ik+
  XP_009139189.1 44 KLLHRDIERQRRQEMATLFASLRSHLPLqY---VKGKRAVSDHVNGAVNFIKD 93
                    6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1239114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.5474294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-844112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.17E-74793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDPYQNPSPK GYQRQRPFGS AGEGGSSGGS DIPREIDDNK KKKKLLHRDI ERQRRQEMAT  60
LFASLRSHLP LQYVKGKRAV SDHVNGAVNF IKDTETRIKE LSARRDELSR ETCQTYKSSP  120
DPARTGSELG KSYPASVMVQ PCVSGFEVAV SSNSSGPEAL PLSRVLETLQ ELGLEVISCL  180
TTRVNERLMH TIQVEVNSFG CLDLAWLQQK LVEELIL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.302730.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139189.11e-161PREDICTED: transcription factor bHLH126-like
RefseqXP_009139202.11e-161PREDICTED: transcription factor bHLH126-like
RefseqXP_013670566.11e-161transcription factor bHLH126
SwissprotQ9STJ61e-118BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A078J1H51e-159A0A078J1H5_BRANA; BnaA01g35240D protein
TrEMBLA0A398ATR71e-159A0A398ATR7_BRACM; Uncharacterized protein
TrEMBLM4DBM91e-159M4DBM9_BRARP; Uncharacterized protein
STRINGBra013889.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-121bHLH family protein