PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139865.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 314aa    MW: 35437.9 Da    PI: 9.0031
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573926.9e-2993182397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                      +rl+se+DeivlLqG++d+   +gk+p +d   +ye +k+s s++v+ +q+ +Kir++ +K++ k+k   s+++ s+ ++h+qk+f+lsk iWg
  XP_009139865.1  93 KKRLFSEKDEIVLLQGIVDY---KGKNPLEDKRSLYESMKGSFSSDVTLDQFRDKIRHMNNKYTAKEKS--SEQQASILNPHQQKCFQLSKAIWG 182
                     58******************...9*******************************************99..9999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-2494182IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MANNLKHPFE DPPSSPSSSA GEKEIEFVSS QEDEDEEGHQ HTIFSSDEDE PEDPPPRSSG  60
EAQLSGRKRL SEGISSSNVS SKRAKKGQKM GTKKRLFSEK DEIVLLQGIV DYKGKNPLED  120
KRSLYESMKG SFSSDVTLDQ FRDKIRHMNN KYTAKEKSSE QQASILNPHQ QKCFQLSKAI  180
WGADGIAFES ANAKLKKSEG RVSKKRDLVS SLKGKKAQEA SNYKRGDMKK SSLVEKGSDW  240
DENSFFLGMD FLKEKWTKLP TETKKGTQEK MKKLHANELE CQKFEKMLKT MKDKCAHDKV  300
ELLNEVTSLI MAGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18194KRAKKGQKMGTKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139865.10.0PREDICTED: probable transcription factor At1g66420
TrEMBLA0A397ZSQ50.0A0A397ZSQ5_BRACM; Uncharacterized protein
STRINGBra028105.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.17e-44DNA-binding storekeeper protein-related transcriptional regulator