PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139867.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 303aa    MW: 34782.3 Da    PI: 7.2577
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57383.72.7e-2690177497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +rl+se+DeivlLqG+id + +   +p  d   +ye +k+s sf+++ +q++eK+r +++K+++k+ +   g++ s s++h+qk+f+lsk iWg
  XP_009139867.1  90 RRLFSEKDEIVLLQGVIDSQVE---NPLGDNRSLYESIKGSFSFDITLRQFSEKLRTMRRKYTTKEMR---GEQASASNPHQQKCFQLSKAIWG 177
                     79****************9544...6899*************************************99...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-2390177IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANNMKHPLE DPPSLSSSAA GEFLFISSQE EDEEDQQHTI FSSDEGEPED PPPRSSSEAL  60
LFGRRISTNV RSKRARRMYT QGEKIGADHR RLFSEKDEIV LLQGVIDSQV ENPLGDNRSL  120
YESIKGSFSF DITLRQFSEK LRTMRRKYTT KEMRGEQASA SNPHQQKCFQ LSKAIWGVEG  180
IAFESANGKS KESKKVDLVT PRKGKNNVQD GSKREDMKKS PHVVIKSDWD ESSFFLGMDF  240
LKEKWTKVPT ETKKKTQEKM KKLHANELEC QKYEEMLKDM KVKCEHDKVE LLHEVTSLIM  300
AVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139867.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139867.10.0PREDICTED: probable transcription factor At1g66420
RefseqXP_013745191.10.0probable transcription factor At1g66420
TrEMBLM4EH400.0M4EH40_BRARP; Uncharacterized protein
STRINGBra028105.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.16e-30DNA-binding storekeeper protein-related transcriptional regulator