PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140019.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 182aa    MW: 21212.9 Da    PI: 8.3411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-172466145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     + +WT+eEd +lv+a+k +G+  W++Ia ++  gRt++ +k+rw+
   XP_009140019.1 24 KSAWTEEEDRILVEAHKVFGNQ-WAKIALKLC-GRTENAIKNRWN 66
                     579*****************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.976118IPR017930Myb domain
SuperFamilySSF466899.18E-25176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-11230IPR009057Homeodomain-like
PROSITE profilePS5129424.0771973IPR017930Myb domain
SMARTSM007172.2E-162371IPR001005SANT/Myb domain
PfamPF002496.6E-152466IPR001005SANT/Myb domain
CDDcd001671.37E-122666No hitNo description
Gene3DG3DSA:1.10.10.606.7E-183166IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MLGTRIGKQC RERWHNHLRH GIKKSAWTEE EDRILVEAHK VFGNQWAKIA LKLCGRTENA  60
IKNRWNGTKR RMHQKRMKRS DKNANPPQNV ILARYIRHVT NKNESPNTKE TDCTKDDKHE  120
NAFDGEMDLS LDVTTQTTEP LASMSTTSSY VPEPATTFSW DDYFTYICES MDDIHMLMQG  180
LD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2827137106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16878KRRMHQKRMKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140019.11e-137PREDICTED: transcription factor MYB98
RefseqXP_013745691.21e-136transcription factor MYB115-like
TrEMBLA0A078HY011e-135A0A078HY01_BRANA; BnaA04g10420D protein
STRINGBra025564.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25230.12e-50myb domain protein 100