PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140058.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 691aa    MW: 79004.5 Da    PI: 5.8772
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140058.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07481523146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el v+  k+ G++ Wk  a  mg  + ++++k+ w+ 
   XP_009140058.1 481 KGVWTKEDLELVVQHQKKRGND-WKVLADAMG--KHRNHVKDAWRR 523
                      799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-4407464IPR009057Homeodomain-like
SMARTSM007170.0093407478IPR001005SANT/Myb domain
PROSITE profilePS500904.031410463IPR017877Myb-like domain
PROSITE profilePS500906.795476525IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-4480523IPR009057Homeodomain-like
SMARTSM007170.39480527IPR001005SANT/Myb domain
SuperFamilySSF466897.8E-7481541IPR009057Homeodomain-like
PfamPF139212.5E-8484542No hitNo description
PROSITE profilePS500906.377526594IPR017877Myb-like domain
PROSITE profilePS500906.876596649IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MVIAANFFKL DSPDSDTDEE RTTTSKVAVQ SQGTLAEPNS MKKKASVEKP DSDSDDGGKK  60
SKKHKKVSGG DEEIGVTEKA LATTDDDDGK RDKGKRKRVD DADDTAHKPK TKKKKTIADS  120
ENSSKKKSKE KMQREVSEVE VNNNDCTKDA YQLHTENPEA GLKKSAKDPK KKRKNKQIDD  180
PEVEGGNKDA QTEDPEADSK KSKKKRKKKQ TDDLEVEEGN KDSTEDAEKA QTEDPEADLN  240
KSKKKRKKKH CDDPEVEEDN KDSTEDAEKR ETENSEADLN KSSKKKMKKK QNEAPEVDGN  300
HKDSTEDADK TQTEAEENDL NSPEIAKKKS KKKKKKKQSE DPEAEVNKEK RRKKQKGSKS  360
DEVLTTPSPK SAKKVNFSDQ VEVFPAESEE ESDEDEEEEE EKVDLVRGKR FTEEEDELIK  420
KSVLEYVDNH ALGDEGINMV MNCKAHKQVR GCWKEIATAL PWRPYTGVYY RAHTLFEEGS  480
KGVWTKEDLE LVVQHQKKRG NDWKVLADAM GKHRNHVKDA WRRIRLASKK RGHWSMKEYQ  540
SLFDLVNKDL RIKVFKEKHS KHGMLRDNIP WMAISDELGT RDHAVCCMKW YDQLTSPMVA  600
KGIWANVDDY RLLDELTNLD AACVDDVDWD NLLDNRDGDV CRSRWNQMAN HIGIPGSKTF  660
AEQVEILSQR YCPDIAEDRE DFDNRPFDPE D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175PKKKRKNK
2243247KKRKK
3327335KKSKKKKKK
4330336KKKKKKK
5334353KKKQSEDPEAEVNKEKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140058.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140058.10.0PREDICTED: myb-like protein X isoform X1
TrEMBLM4E9S30.0M4E9S3_BRARP; Uncharacterized protein
STRINGBra025529.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-175MYB_related family protein