PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140059.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 658aa    MW: 75218.4 Da    PI: 5.8641
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07448490146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el v+  k+ G++ Wk  a  mg  + ++++k+ w+ 
   XP_009140059.1 448 KGVWTKEDLELVVQHQKKRGND-WKVLADAMG--KHRNHVKDAWRR 490
                      799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-4374431IPR009057Homeodomain-like
SMARTSM007170.0093374445IPR001005SANT/Myb domain
PROSITE profilePS500904.031377430IPR017877Myb-like domain
PROSITE profilePS500906.795443492IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-4447490IPR009057Homeodomain-like
SMARTSM007170.39447494IPR001005SANT/Myb domain
SuperFamilySSF466897.57E-7448508IPR009057Homeodomain-like
PfamPF139212.4E-8451509No hitNo description
PROSITE profilePS500906.377493561IPR017877Myb-like domain
PROSITE profilePS500906.876563616IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MVIAANFFKL DSPDSDTDEE RTTTSKVAVQ SQGTLAEPNS MKKKASVEKP DSDSDDGGKK  60
SKKHKKVSGG DEEIGVTEKA LATTDDDDGK RDKGKRKRVD DADDTAHKPK TKKKKTIADS  120
ENSSKKKSKE KMQREVSEVE VNNNDCTKDA YQLHTENPEA GLKKSAKDPK KKRKNKQIDD  180
PEVEGGNKDS TEDAEKAQTE DPEADLNKSK KKRKKKHCDD PEVEEDNKDS TEDAEKRETE  240
NSEADLNKSS KKKMKKKQNE APEVDGNHKD STEDADKTQT EAEENDLNSP EIAKKKSKKK  300
KKKKQSEDPE AEVNKEKRRK KQKGSKSDEV LTTPSPKSAK KVNFSDQVEV FPAESEEESD  360
EDEEEEEEKV DLVRGKRFTE EEDELIKKSV LEYVDNHALG DEGINMVMNC KAHKQVRGCW  420
KEIATALPWR PYTGVYYRAH TLFEEGSKGV WTKEDLELVV QHQKKRGNDW KVLADAMGKH  480
RNHVKDAWRR IRLASKKRGH WSMKEYQSLF DLVNKDLRIK VFKEKHSKHG MLRDNIPWMA  540
ISDELGTRDH AVCCMKWYDQ LTSPMVAKGI WANVDDYRLL DELTNLDAAC VDDVDWDNLL  600
DNRDGDVCRS RWNQMANHIG IPGSKTFAEQ VEILSQRYCP DIAEDREDFD NRPFDPED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175PKKKRKNK
2210214KKRKK
3294302KKSKKKKKK
4297303KKKKKKK
5301320KKKQSEDPEAEVNKEKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140059.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140059.10.0PREDICTED: cyclin-D-binding Myb-like transcription factor 1 isoform X3
TrEMBLM4E9S30.0M4E9S3_BRARP; Uncharacterized protein
STRINGBra025529.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-175MYB_related family protein