PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140060.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 651aa    MW: 74450.6 Da    PI: 6.0847
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07441483146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el v+  k+ G++ Wk  a  mg  + ++++k+ w+ 
   XP_009140060.1 441 KGVWTKEDLELVVQHQKKRGND-WKVLADAMG--KHRNHVKDAWRR 483
                      799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0093367438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-4367424IPR009057Homeodomain-like
PROSITE profilePS500904.031370423IPR017877Myb-like domain
PROSITE profilePS500906.795436485IPR017877Myb-like domain
SMARTSM007170.39440487IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-4440483IPR009057Homeodomain-like
SuperFamilySSF466897.41E-7441501IPR009057Homeodomain-like
PfamPF139212.4E-8444502No hitNo description
PROSITE profilePS500906.377486554IPR017877Myb-like domain
PROSITE profilePS500906.876556609IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVIAANFFKL DSPDSDTDEE RTTTSKVAVQ SQGTLAEPNS MKKKASVEKP DSDSDDGGKK  60
SKKHKKVSGG DEEIGVTEKA LATTDDDDGK RDKGKRKRVD DADDTAHKPK TKKKKTIADS  120
ENSSKKKSKE KMQREVSEVE VNNNDCTKDA YQLHTENPEA GLKKSAKDPK KKRKNKQIDD  180
PEVEGGNKDA QTEDPEADSK KSKKKRKKKQ TDDLEVEEDN KDSTEDAEKR ETENSEADLN  240
KSSKKKMKKK QNEAPEVDGN HKDSTEDADK TQTEAEENDL NSPEIAKKKS KKKKKKKQSE  300
DPEAEVNKEK RRKKQKGSKS DEVLTTPSPK SAKKVNFSDQ VEVFPAESEE ESDEDEEEEE  360
EKVDLVRGKR FTEEEDELIK KSVLEYVDNH ALGDEGINMV MNCKAHKQVR GCWKEIATAL  420
PWRPYTGVYY RAHTLFEEGS KGVWTKEDLE LVVQHQKKRG NDWKVLADAM GKHRNHVKDA  480
WRRIRLASKK RGHWSMKEYQ SLFDLVNKDL RIKVFKEKHS KHGMLRDNIP WMAISDELGT  540
RDHAVCCMKW YDQLTSPMVA KGIWANVDDY RLLDELTNLD AACVDDVDWD NLLDNRDGDV  600
CRSRWNQMAN HIGIPGSKTF AEQVEILSQR YCPDIAEDRE DFDNRPFDPE D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175PKKKRKNK
2203207KKRKK
3287295KKSKKKKKK
4290296KKKKKKK
5294313KKKQSEDPEAEVNKEKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140060.10.0PREDICTED: myb-like protein X isoform X4
TrEMBLM4E9S30.0M4E9S3_BRARP; Uncharacterized protein
STRINGBra025529.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-175MYB_related family protein