PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009140061.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 224aa MW: 24724.6 Da PI: 7.816

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.2	3.1e-30	43	117	4	74
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 ++++ +++h kv+gR+ RvRl+ +caar+F+L++eLG+++d++t++WLl+ a+p+i+ +tgt+ ++a+++ XP_009140061.1 43 QTKSRKDRHLKVEGRGGRVRLPPLCAARIFQLTRELGHKTDGETLQWLLRHAEPSIISATGTGIKPATDSvsqpP 117 67899*********************************************************8888855433322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-23	46	111	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.315	47	101	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDPNLLNPSE TETEVKKVLN NTVEGKRKWK QKEKKGKEGH EIQTKSRKDR HLKVEGRGGR 60 VRLPPLCAAR IFQLTRELGH KTDGETLQWL LRHAEPSIIS ATGTGIKPAT DSVSQPPPHA 120 VDLNLDGGSR SQLANGFWEN ETGFGIVGAN PTGGGFDLNC GIGFLGFDFN GSSDMGFENN 180 QMPQVGVLNP RIYQQIGQEH AKVLQHHYHH PHEAQQENAD KQGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140061.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140061.1	1e-167	PREDICTED: transcription factor TCP6
Swissprot	Q9FLM6	8e-66	TCP6_ARATH; Transcription factor TCP6
TrEMBL	M4E9S2	1e-165	M4E9S2_BRARP; Uncharacterized protein
STRING	Bra025528.1-P	1e-166	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	4e-68	TCP family protein

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]