PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140067.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 202aa    MW: 23676.5 Da    PI: 4.488
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.13.1e-1881441128
             NAM   1 lppGfrFhPtdeelvveyLkkk.vegkklelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     lp+GfrF+Ptd e+ ++ L+k+ +e++++++ +   v +e+ di++ +P+dLp     +e+++yf++k+ +++ t   +n   ++++Wk+ g+d+
  XP_009140067.1   8 LPVGFRFRPTDCEISKYLLTKNdMEEQPMKIRNvryVPEEChDIFSKHPRDLPGY--PRETDLYFYCKKLSSQVT---TN---SHSIWKQIGEDT 94 
                     79***********98555544434555555544332455669***********43..47899******9876543...33...3579******** PP

             NAM  91 evlsk..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128
                     +vl+   +++lvg+k+ +++             ++ ++++ +W+m+e +l
  XP_009140067.1  95 DVLDPknNDALVGIKRPFTLVdheeesddilLSDEDEPSQYNWFMDEISL 144
                     ***98666677*****99999666655554437788888*******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-225161IPR003441NAC domain
PROSITE profilePS5100525.4488161IPR003441NAC domain
PfamPF023657.4E-109143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MELKHRGLPV GFRFRPTDCE ISKYLLTKND MEEQPMKIRN VRYVPEECHD IFSKHPRDLP  60
GYPRETDLYF YCKKLSSQVT TNSHSIWKQI GEDTDVLDPK NNDALVGIKR PFTLVDHEEE  120
SDDILLSDED EPSQYNWFMD EISLPLSVSE TDWVLCHVFR KIKPEFESKE EKEEEEESVF  180
AKSLDLLREN DGNVLPPSHS TP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140067.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140067.11e-148PREDICTED: NAC domain-containing protein 104
TrEMBLA0A397ZJY51e-146A0A397ZJY5_BRACM; Uncharacterized protein
STRINGBo4g140840.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-66NAC family protein