PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140184.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 131aa    MW: 15104.6 Da    PI: 10.678
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140184.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind43.96.6e-14597298
                    HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95
                    F  +ly+i++d++ +++isws ++ n fvv+d +++ +++L k      +n++ F+ +L   gF++v +  ++        eF+h+ F++g  ++ +
  XP_009140184.1  5 FYIQLYKIVDDPSSDQIISWSkSSPNIFVVWDLKKLRRDILFKssGVLGRNLSEFIAKLRSHGFRSVLKGFGE-------LEFEHDDFTRGLVTKKT 94
                    899******************6666***************9662245679*********************99.......**********9877766 PP

                    XXX CS
    HSF_DNA-bind 96 kik 98
                    ki 
  XP_009140184.1 95 KII 97
                    664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.0E-11199IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-12388IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-14388IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-6528IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-11592IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-65971IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MISSFYIQLY KIVDDPSSDQ IISWSKSSPN IFVVWDLKKL RRDILFKSSG VLGRNLSEFI  60
AKLRSHGFRS VLKGFGELEF EHDDFTRGLV TKKTKIIKAF SDRFDAQIKA IKCRFKAKKA  120
SSSLKVEHLF P
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140184.18e-90PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A078I4032e-88A0A078I403_BRANA; BnaA04g09890D protein
TrEMBLM4EA042e-88M4EA04_BRARP; Uncharacterized protein
STRINGBra025611.1-P3e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.13e-13Winged helix-turn-helix transcription repressor DNA-binding