PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140185.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 140aa    MW: 16251 Da    PI: 10.6421
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind48.22.8e-151093289
                    HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHST..T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
    HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFk..hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89
                    F  +ly+i+ed++ +++isw+ +n+nsf+v+d +++ +++L+ky     +n++ F+ +L   gF++v +  ++        eF+h+ F ++
  XP_009140185.1 10 FYIQLYQIIEDRSSDQIISWNkSNNNSFIVWDLKKLRSDILSKYSSvlGRNLTEFIAKLRSHGFRSVVKGPGE-------LEFSHDDFARS 93
                    899******************8999******************9762269*******************9998.......9*******886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-17593IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-136102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.72E-13793IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.8E-131094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-61033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-66476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MISKLSTSSF YIQLYQIIED RSSDQIISWN KSNNNSFIVW DLKKLRSDIL SKYSSVLGRN  60
LTEFIAKLRS HGFRSVVKGP GELEFSHDDF ARSPLMKKMM VKALSERIEK FDAQIKAMKC  120
RLKAKKATLN VENLFQNLRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140185.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140185.12e-98PREDICTED: heat stress transcription factor A-4a-like
TrEMBLM4EA014e-97M4EA01_BRARP; Uncharacterized protein
STRINGBra025608.1-P6e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.18e-26Winged helix-turn-helix transcription repressor DNA-binding