PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009140186.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 140aa MW: 16274 Da PI: 10.6766

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	50.2	7.1e-16	10	95	2	91
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 F +ly+i++d++ +++isw+ +n+nsf+v+d +++ +++Lpk +n++ F+ +L gFk v + ++ eF+h+ F++g XP_009140186.1 10 FYIQLYQIIDDRSSDQIISWNkSNNNSFIVWDLKKLRSNILPKssSVLGKNMTEFIAKLRSHGFKTVVKGPGE-------LEFSHDDFERGPL 95 899****************8999************994456689***************9999.......*******9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.9E-18	4	93	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-13	6	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.44E-14	7	94	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.1E-13	10	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-5	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-5	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MVRKLSTSSF YIQLYQIIDD RSSDQIISWN KSNNNSFIVW DLKKLRSNIL PKSSSVLGKN 60 MTEFIAKLRS HGFKTVVKGP GELEFSHDDF ERGPLMKKMM VKALSERIER FDAQIKSMKC 120 RLKAKEASLK VENLFQNLRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140186.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140186.1	6e-99	PREDICTED: heat stress transcription factor A-4a-like
TrEMBL	A0A3P6CAK3	1e-97	A0A3P6CAK3_BRACM; Uncharacterized protein
TrEMBL	M4E9Z9	1e-97	M4E9Z9_BRARP; Uncharacterized protein
STRING	Bra025606.1-P	2e-98	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	9e-19	Winged helix-turn-helix transcription repressor DNA-binding