PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140275.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 190aa    MW: 21245.2 Da    PI: 9.1642
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702190.65.7e-5961484154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 
                     ++ +C+dCGnqakk+C+++RCRtCCk+++f+C+th+kstWvpa++r++++q ++ ++ +   ++  + +++kr  +++ +s+ ss+ +       
  XP_009140275.1   6 TGRRCEDCGNQAKKECVYMRCRTCCKAKAFHCQTHIKSTWVPAYRRSHKHQSQTPPQPQ---QQPLSITNSKRLIEQHPTSSPSSSGVR-----I 92 
                     5679*******************************************997776665433...345566666666655555555555544.....4 PP

          DUF702  99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++t ++P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhv +GiL+dqGle+
  XP_009140275.1  93 GTSTGHFPAELSSVADFRCVKVSSIDDGKEQYAYQTTVNIGGHVIRGILHDQGLEK 148
                     566799***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.4E-567147IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.4E-271051IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.9E-2898146IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MIMMVTGRRC EDCGNQAKKE CVYMRCRTCC KAKAFHCQTH IKSTWVPAYR RSHKHQSQTP  60
PQPQQQPLSI TNSKRLIEQH PTSSPSSSGV RIGTSTGHFP AELSSVADFR CVKVSSIDDG  120
KEQYAYQTTV NIGGHVIRGI LHDQGLEKVV LDHQPAHHDQ ALLLPSSSRP LMITSHFTDF  180
MSGNHTKSLH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0068415e-59AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBankCP0026855e-59CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140275.11e-141PREDICTED: protein SHI RELATED SEQUENCE 3
SwissprotQ9SJT85e-82SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLM4END11e-140M4END1_BRARP; Uncharacterized protein
STRINGBra030301.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.12e-82SHI-related sequence3