PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140311.1
Common NameWRKY59
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 196aa    MW: 22638.4 Da    PI: 6.9531
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30104162159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYG+K+++gs+fpr+Y++C+ a+C vkkk+er++++p++v +tYeg+Hnh+
  XP_009140311.1 104 LDDGFKWRKYGKKPIRGSPFPRHYHKCSNANCIVKKKIERDTSNPDYVLTTYEGRHNHP 162
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-2797164IPR003657WRKY domain
PROSITE profilePS5081128.74799164IPR003657WRKY domain
SuperFamilySSF1182903.4E-25100164IPR003657WRKY domain
SMARTSM007745.9E-31104163IPR003657WRKY domain
PfamPF031068.9E-22105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MNYPSNPNPN FIDFPITFTS DDYDDAFQMI MEQISLENHS PTLSWTSSEK LLAAEVTSPL  60
QTSLVTSPMS LEIEDKTEIK KRKRHKDDPI IHVFKTKSIE EIALDDGFKW RKYGKKPIRG  120
SPFPRHYHKC SNANCIVKKK IERDTSNPDY VLTTYEGRHN HPSPSVVYCD SDDFDLTSLN  180
ILSFQTRTYK YSHSAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-211041651778Probable WRKY transcription factor 4
2lex_A1e-211041651778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00270DAPTransfer from AT2G21900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300660.0KF430066.1 Brassica rapa WRKY transcription factor 59 (WRKY59) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288993.11e-145probable WRKY transcription factor 59
SwissprotQ9SJ095e-92WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLA0A078FSM51e-144A0A078FSM5_BRANA; BnaA04g12540D protein
TrEMBLM4ENA31e-144M4ENA3_BRARP; Uncharacterized protein
TrEMBLV5RF011e-144V5RF01_BRACM; WRKY transcription factor 59
STRINGBra030273.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.12e-94WRKY DNA-binding protein 59
Publications ? help Back to Top
  1. Tang J, et al.
    Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis).
    BMC Plant Biol., 2013. 13: p. 188
    [PMID:24267479]