PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140395.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 281aa    MW: 30862.7 Da    PI: 7.9098
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-19114168256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+ +++++ +++++LA++l+L  rqV vWFqNrRa+ k
  XP_009140395.1 114 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTK 168
                     788899***********************************************98 PP
2HD-ZIP_I/II124.74.4e-40114203191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l
  XP_009140395.1 114 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELK-TL 203
                     69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.491110170IPR001356Homeobox domain
SMARTSM003892.1E-16112174IPR001356Homeobox domain
SuperFamilySSF466891.72E-18112178IPR009057Homeodomain-like
CDDcd000861.07E-17114171No hitNo description
PfamPF000462.1E-16114168IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-17114168IPR009057Homeodomain-like
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
SMARTSM003404.0E-24170213IPR003106Leucine zipper, homeobox-associated
PfamPF021832.5E-9170203IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGFDDSCNTG LVLGLGLSPS SNNYNNTIKR SSGYKSDPSL TLSLSGDPSM MVVAGADLLC  60
RQTSSHSGVS SFSTGRVVKR ERDGCEESQE EEEKEKTERL ISDYHEDEEG VSARKKLRLT  120
KEQSALLEES FKHHSTLNPK QKQDLARQLN LRPRQVEVWF QNRRARTKLK QTEVDCEFLK  180
KCCETLTDEN IRLQKEIQEL KTLKLTHPPF YMHMPASTLT MCPSCERIGG RSGGESGGKG  240
VGGGSSVATT VVVDGGTTKG AFSISSKPHF FNPCTNSSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162170RRARTKLKQ
2236243GGKGVGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.188570.0bud
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140395.10.0PREDICTED: homeobox-leucine zipper protein HAT9
SwissprotP466031e-143HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLM4EN300.0M4EN30_BRARP; Uncharacterized protein
STRINGBra030200.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-120HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]