PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140396.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 232aa    MW: 25812.2 Da    PI: 8.1592
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-1965119256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+ +++++ +++++LA++l+L  rqV vWFqNrRa+ k
  XP_009140396.1  65 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTK 119
                     788899***********************************************98 PP
2HD-ZIP_I/II125.22.9e-4065154191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l
  XP_009140396.1  65 RKKLRLTKEQSALLEESFKHHSTLNPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELK-TL 154
                     69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.49161121IPR001356Homeobox domain
SMARTSM003892.1E-1663125IPR001356Homeobox domain
SuperFamilySSF466891.24E-1863129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-1865119IPR009057Homeodomain-like
PfamPF000461.5E-1665119IPR001356Homeobox domain
CDDcd000861.66E-1665122No hitNo description
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
SMARTSM003404.0E-24121164IPR003106Leucine zipper, homeobox-associated
PfamPF021831.9E-9121154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MMVVAGADLL CRQTSSHSGV SSFSTGRVVK RERDGCEESQ EEEEKEKTER LISDYHEDEE  60
GVSARKKLRL TKEQSALLEE SFKHHSTLNP KQKQDLARQL NLRPRQVEVW FQNRRARTKL  120
KQTEVDCEFL KKCCETLTDE NIRLQKEIQE LKTLKLTHPP FYMHMPASTL TMCPSCERIG  180
GRSGGESGGK GVGGGSSVAT TVVVDGGTTK GAFSISSKPH FFNPCTNSSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARTKLKQ
2187194GGKGVGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.188570.0bud
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140395.11e-172PREDICTED: homeobox-leucine zipper protein HAT9
SwissprotP466031e-112HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLM4EN301e-170M4EN30_BRARP; Uncharacterized protein
STRINGBra030200.1-P1e-171(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-104HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]