PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140412.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 124aa    MW: 14648 Da    PI: 10.8582
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind42.51.7e-13280592
                    HHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
    HSF_DNA-bind  5 klyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkh.snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
                    +lyei++d++l+ +isw+ +++nsf+v+d  +f +k+Lpk  +  +nf+ Fv  L   gF+++              eF h++F +++  
  XP_009140412.1  2 ELYEIVNDHSLDAIISWTnNSNNSFIVWDVPRFCTKILPKSVEFgRNFSEFVSELRHHGFQRIGW-----------FEFGHNNFVRSRPW 80
                    69****************7778*****************97764279*************98754...........44556666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-15283IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-15285IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.53E-17285IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-7388IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MELYEIVNDH SLDAIISWTN NSNNSFIVWD VPRFCTKILP KSVEFGRNFS EFVSELRHHG  60
FQRIGWFEFG HNNFVRSRPW LLKRMVPSKA WDDKFGAKLK AKRDKAKAKK ARAKVVRLLE  120
NLQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110KAKAKKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140412.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140412.12e-87PREDICTED: heat stress transcription factor A-1d
TrEMBLM4ENH15e-86M4ENH1_BRARP; Uncharacterized protein
STRINGBra030341.1-P8e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-27Winged helix-turn-helix transcription repressor DNA-binding