PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140425.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 174aa    MW: 19129.4 Da    PI: 7.6364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323e-10771042855
             AP2  28 rkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +r+slg+f+ta eAa+a+++a+ kl+g
  XP_009140425.1  77 GTRVSLGTFDTAIEAARAYDQAAFKLRG 104
                     39************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.6347112IPR001471AP2/ERF domain
SMARTSM003801.1E-956118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-1656113IPR001471AP2/ERF domain
CDDcd000182.76E-1563112No hitNo description
SuperFamilySSF541714.45E-1176114IPR016177DNA-binding domain
PfamPF008473.4E-678104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLHRRLLLPG SLEIEPETAV EDPAAEQNRV DPIRNRKSPA RAASRTCVRG REDALQRSED  60
EAVGEIRGGD PRSEPSGTRV SLGTFDTAIE AARAYDQAAF KLRGSKAIVN FPLEVGTWNQ  120
LADVGQNKRK RDGEEEHTFT TTRCTGETVL SNHHLSPPIS PTSIAHLVRK QAIV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.57361e-143root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367911e-140AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140425.11e-125PREDICTED: ethylene-responsive transcription factor ERF107-like
TrEMBLM4DM801e-54M4DM80_BRARP; Uncharacterized protein
TrEMBLM4EF852e-55M4EF85_BRARP; Uncharacterized protein
STRINGBra017612.1-P2e-55(Brassica rapa)
STRINGBra027447.1-P3e-56(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-27ethylene responsive element binding factor 5