PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140570.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 129aa    MW: 15048.4 Da    PI: 7.9294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.2e-1616961197
                    HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    + ++ l +p  f+++h +g +  + t +l++  s  +W+v++  + ++ r  lt+GWkeF+ a++L++gD+v+F+ +++++f  +v+++
  XP_009140570.1 16 FHTH-LKIPVAFFSKHmEGRNDHKNTAKLRSeASEMTWKVNI--EDGR-R--LTEGWKEFALAHDLRVGDIVIFRQERDMSF--HVTLL 96
                    4455.99**********555556679*****55669******..4444.3..9**********************8777888..77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-205106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.28599IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-245111IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-15696No hitNo description
SMARTSM010196.8E-23899IPR003340B3 DNA binding domain
PfamPF023629.5E-121893IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MRMANKHFFQ PLLPGFHTHL KIPVAFFSKH MEGRNDHKNT AKLRSEASEM TWKVNIEDGR  60
RLTEGWKEFA LAHDLRVGDI VIFRQERDMS FHVTLLGPSC CEIQYGSCID QDNNLGQFFV  120
FCLFQKLCV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573891.13e-80B3 domain-containing protein REM14-like
SwissprotQ8GYM46e-58REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A397ZTS52e-80A0A397ZTS5_BRACM; Uncharacterized protein
STRINGBo4g154830.12e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-60B3 family protein