PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140573.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 225aa    MW: 24578.2 Da    PI: 7.8027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140573.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.8e-18489593
                    -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                     + +d+l +gr +l+ +f++++g+ k++  ++tl  ++g++W+v+l+ + ++++  l++GWkeF+kangLk+g+ ++++  + +++ ++
  XP_009140573.1  4 KLANDSLIRGRQYLSVPFMRANGMTKPG--MITLVGKDGEKWKVNLKEEASGSALCLGTGWKEFAKANGLKTGEYFTLESAW-KNEIPM 89
                    5678899999************998666..8***************88888888************************9666.444455 PP
2B338.71.7e-121362221099
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       k + l lp +f++++g+k+ +  t+t+  ++g +W   l      g++  + GW++F++ang+k g+++ + l+++ +++ + +k++ +
  XP_009140573.1 136 DVKACTLNLPSEFVTAIGIKEFG--TITFLGKNGMKWWGCL--LSENGSVAVGIGWRNFCEANGVKLGESFSLVLINEeEDTGPIFKFCPN 222
                     456689***********988544..9********9999888..666677999************************888999999999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.5E-23196IPR003340B3 DNA binding domain
PROSITE profilePS5086313.662196IPR003340B3 DNA binding domain
PfamPF023622.5E-16290IPR003340B3 DNA binding domain
CDDcd100179.64E-18592No hitNo description
Gene3DG3DSA:2.40.330.104.6E-16990IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-171293IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.9E-12127223IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856127225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-14128220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-14133221IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-11136222IPR003340B3 DNA binding domain
CDDcd100173.05E-8140210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKLKLANDSL IRGRQYLSVP FMRANGMTKP GMITLVGKDG EKWKVNLKEE ASGSALCLGT  60
GWKEFAKANG LKTGEYFTLE SAWKNEIPML SLVNTESASD RKERGESSKA MEKESTDTSS  120
VVQNRVVVTL ALETKDVKAC TLNLPSEFVT AIGIKEFGTI TFLGKNGMKW WGCLLSENGS  180
VAVGIGWRNF CEANGVKLGE SFSLVLINEE EDTGPIFKFC PNSGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140573.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140573.11e-162PREDICTED: B3 domain-containing protein REM12-like
SwissprotP0CAP43e-76REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078IW321e-159A0A078IW32_BRANA; BnaA04g28160D protein
STRINGBo4g154910.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-78B3 family protein