PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140576.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 225aa    MW: 24628.3 Da    PI: 8.7133
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.3e-17689793
                    .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                     +d+l + r +l+ +f++++g+ k++   +tl  ++g +W+v+l  +k++++  l+kGWk+F+kangLk+g+ ++++  + +++ ++
  XP_009140576.1  6 AHDSLIKYRQYLSVPFMRANGMTKPG--LITLVGKDGAKWKVNLYEEKSGSSLCLGKGWKDFAKANGLKTGEYFTLESAW-KNEIPM 89
                    56777777899*********999766..7***************44777777************************9666.444455 PP
2B343.74.8e-141362201097
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                       k + l lp +f+++ g+kk +  ++tl  ++g +W   l    ++g++  + GW++F++ang+k gD++ + ++++ +++ +v+k+ 
  XP_009140576.1 136 DVKACTLHLPSEFVTAVGIKKLG--EITLLGRDGMKWCGCL--LSRDGTVAVGVGWRNFCEANGVKLGDSFSLVFINEeEDTGPVFKFS 220
                     456789***********999655..8***************..999999************************9998879999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.5E-20196IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971196IPR003340B3 DNA binding domain
PfamPF023628.2E-16390IPR003340B3 DNA binding domain
CDDcd100171.24E-17592No hitNo description
Gene3DG3DSA:2.40.330.105.2E-16990IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-181293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-15124221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-16125220IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-13127223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857127222IPR003340B3 DNA binding domain
PfamPF023622.8E-12136220IPR003340B3 DNA binding domain
CDDcd100175.70E-12140220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKLKLAHDSL IKYRQYLSVP FMRANGMTKP GLITLVGKDG AKWKVNLYEE KSGSSLCLGK  60
GWKDFAKANG LKTGEYFTLE SAWKNEIPML SLVNTESASD GKERGESSKA MEKERSTDTS  120
SIVQNRVVTL ALETKDVKAC TLHLPSEFVT AVGIKKLGEI TLLGRDGMKW CGCLLSRDGT  180
VAVGVGWRNF CEANGVKLGD SFSLVFINEE EDTGPVFKFS PNSGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140576.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140576.21e-165PREDICTED: B3 domain-containing protein REM12-like
SwissprotP0CAP42e-76REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078I6741e-161A0A078I674_BRANA; BnaA04g14590D protein
TrEMBLA0A3P6CKX61e-161A0A3P6CKX6_BRACM; Uncharacterized protein
STRINGBra032076.1-P1e-153(Brassica rapa)
STRINGBo4g154880.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.19e-79B3 family protein