PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140669.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 211aa    MW: 23799.4 Da    PI: 10.3759
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.5e-16142190153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                     +++kGVr ++ +g+W AeI+dps+   + r +lg f tae+Aa+a+++a+ ++
  XP_009140669.1 142 KKHKGVRKKP-SGKWSAEIWDPSS---KVRRWLGVFPTAEMAARAYDEAAAEF 190
                     589****999.7*********854...5999******************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-20143191IPR001471AP2/ERF domain
PfamPF008472.2E-8143190IPR001471AP2/ERF domain
SMARTSM003806.4E-22143207IPR001471AP2/ERF domain
PROSITE profilePS5103219.151143204IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-15143192IPR016177DNA-binding domain
PRINTSPR003674.7E-6144155IPR001471AP2/ERF domain
CDDcd000185.05E-13146182No hitNo description
PRINTSPR003674.7E-6166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MFGQKSNAKK RYVRLQSPCI AYINPTRSIC FQIFIPLSIF LQLFTKKMDY SYNVPSDDQN  60
PVALRPPSSS SSYLTRDQEH QIMVSALRQV ISKVGRDTSS PNGITSGVDL PLPDAGPCPL  120
CGITGCYGCA FQQRDEEIKK EKKHKGVRKK PSGKWSAEIW DPSSKVRRWL GVFPTAEMAA  180
RAYDEAAAEF IERISARRGQ MNGHGIKRRR R
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140669.11e-158PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ38Q404e-68EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLM4EZK71e-118M4EZK7_BRARP; Uncharacterized protein
STRINGBra034250.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.11e-49ERF family protein