PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140700.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 203aa    MW: 22343.2 Da    PI: 4.7345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-162573355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  XP_009140700.1 25 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 73
                    89999888.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-102473IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-202482IPR016177DNA-binding domain
SMARTSM003807.2E-372487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-312482IPR001471AP2/ERF domain
PROSITE profilePS5103223.0372481IPR001471AP2/ERF domain
PRINTSPR003672.9E-102536IPR001471AP2/ERF domain
CDDcd000184.28E-322583No hitNo description
PRINTSPR003672.9E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVASNGEDTE SSSTRKKKET SAVVYRGARM RSWGKWVSEI REPRKKSRIW LGTFPTAEMA  60
ARAHDVAALS IKGSSAILNF PELTNSLPRP VSLSPADIQA AATKAAFMEF KTPSLHLEDG  120
TPSQTRCETE TSDKASSSPT TSTLSEELGE IVELPTLDNE LSKDFALFDS LEVLVGMPPW  180
LDATEKDPVL FDPLFQESLL WNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1925851576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, seeds and stamen. {ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140700.11e-146PREDICTED: ethylene-responsive transcription factor ERF042
SwissprotQ52QU16e-84ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLM4EZN01e-145M4EZN0_BRARP; Uncharacterized protein
STRINGBra034273.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.12e-78ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]