PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140722.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 168aa    MW: 19373.2 Da    PI: 9.6291
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.97.2e-2952140297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      fqr+wseeDei+lLqG++d+k++ g +p++ + +a+y+ +k +is+ v++ q+++Kir LKkKfkk+++k         sk+++qk f+lsk i
  XP_009140722.1  52 CFQRIWSEEDEIALLQGIVDYKETSGLDPFNgERKALYDLLKPHISVSVTSVQFFQKIRTLKKKFKKEKNK--------GSKPNNQKLFHLSKLI 138
                     59*****************************9**********************************99999........688999********** PP

          DUF573  96 Wg 97 
                     Wg
  XP_009140722.1 139 WG 140
                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-2353140IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MLFAVWKHLP QIPVASLELL LTSDLHVETD EGEKAKSVKR ASVSDGETKA NCFQRIWSEE  60
DEIALLQGIV DYKETSGLDP FNGERKALYD LLKPHISVSV TSVQFFQKIR TLKKKFKKEK  120
NKGSKPNNQK LFHLSKLIWG DEEISYAEKD ELKTGEGRKR SVFQLWRH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140722.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140722.11e-121PREDICTED: transcription factor STKL2-like
TrEMBLA0A078H6X21e-105A0A078H6X2_BRANA; BnaA01g14230D protein
TrEMBLA0A3P5ZQJ41e-105A0A3P5ZQJ4_BRACM; Uncharacterized protein
TrEMBLM4DBI21e-105M4DBI2_BRARP; Uncharacterized protein
STRINGBra013842.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.13e-15DNA-binding storekeeper protein-related transcriptional regulator