PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009140890.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 193aa MW: 22791.4 Da PI: 4.4573

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.6	6.7e-29	17	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+P de+lv eyL+kkv ++++++ ++e++ ++v+PwdL +++e+y+F+k+++++ +k r t sgyW++ + +ev+++ XP_009140890.1 17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GDKNTEMYYFVKKEERE----KKGRETLSGYWEECEE-EEVMES 101 79***********************999..49*********6...55778***99976....6789999*8866.667776 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + l g kkt++fy g++p+g+ t W+ e+rl XP_009140890.1 102 gdrgCNYLEGRKKTFAFYIGQRPRGTITPWIKYEFRL 138 454444559************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-31	6	166	IPR003441	NAC domain
PROSITE profile	PS51005	31.588	17	167	IPR003441	NAC domain
Pfam	PF02365	5.8E-17	18	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MDISTQRFSM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD 60 LLGDKNTEMY YFVKKEEREK KGRETLSGYW EECEEEEVME SGDRGCNYLE GRKKTFAFYI 120 GQRPRGTITP WIKYEFRLLS SRATRWSSSS LPRGAVENWR AVKVIVKEEN EEEIEEDEQA 180 SDESDGEEVV QSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-17	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-17	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-17	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-17	15	139	15	143	NO APICAL MERISTEM PROTEIN
3swm_A	4e-17	15	139	18	146	NAC domain-containing protein 19
3swm_B	4e-17	15	139	18	146	NAC domain-containing protein 19
3swm_C	4e-17	15	139	18	146	NAC domain-containing protein 19
3swm_D	4e-17	15	139	18	146	NAC domain-containing protein 19
3swp_A	4e-17	15	139	18	146	NAC domain-containing protein 19
3swp_B	4e-17	15	139	18	146	NAC domain-containing protein 19
3swp_C	4e-17	15	139	18	146	NAC domain-containing protein 19
3swp_D	4e-17	15	139	18	146	NAC domain-containing protein 19
4dul_A	3e-17	15	139	15	143	NAC domain-containing protein 19
4dul_B	3e-17	15	139	15	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974765	0.0	KF974765.1 Brassica napus NAC transcription factor 97-1 (NAC97-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140890.1	1e-140	PREDICTED: NAC domain-containing protein 41
TrEMBL	A0A397XIR7	1e-139	A0A397XIR7_BRACM; Uncharacterized protein
STRING	Bra035712.1-P	1e-133	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14666	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50820.1	4e-80	NAC domain containing protein 97