PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140896.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 286aa    MW: 31561.2 Da    PI: 5.0918
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140896.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18215249135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C ttkTp+WR+gp g+ktLCnaCG+++r+ +l
  XP_009140896.1 215 CTHCETTKTPQWREGPCGPKTLCNACGVRFRSGRL 249
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-16209259IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-14213272No hitNo description
Gene3DG3DSA:3.30.50.103.0E-14213246IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.49213245IPR000679Zinc finger, GATA-type
CDDcd002022.63E-14215251No hitNo description
PfamPF003203.7E-16215249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MLSSCNASGC GQMNNGGSWL PEEEEELKGL SENFFDDLIT LPLEEDMETG DDDEEGDWDA  60
KFENLVPPPL DLLTSLSSEF THAPRAGLLR NPLPTLKQSS SSEVSSSSLP DVKLSTLFQS  120
SSALSVLENA AAANGSVSFP VKGTRSNLRK RPTPPTFRSL KSFASEMVQQ FAPDDPDSET  180
YLPFAKKKRQ RKNKDQSSVS DSPEQFNADG TIRMCTHCET TKTPQWREGP CGPKTLCNAC  240
GVRFRSGRLL PEYRPSSSPS FIPSLHSNSH RKIIEMRRKD QDLQPG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190KKKRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140896.10.0PREDICTED: GATA transcription factor 11-like isoform X2
SwissprotQ6DBP82e-83GAT11_ARATH; GATA transcription factor 11
TrEMBLM4F3Q80.0M4F3Q8_BRARP; Uncharacterized protein
STRINGBra035708.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.28e-55GATA transcription factor 11