PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140905.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 232aa    MW: 25530.9 Da    PI: 4.6424
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.41e-42561551100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+l+
  XP_009140905.1  56 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLV 150
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     +++ e
  XP_009140905.1 151 KTQVE 155
                     98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS001380919IPR023828Peptidase S8, subtilisin, Ser-active site
PROSITE profilePS5089126.31355156IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-4256153IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLKMEINGGT SAATPTVSAV AVATVKETTT PINSPSPTSS PPPPPLSPQQ TVVLSPCAAC  60
KILRRRCAEK CVLAPYFPPT DPAKFTIAHR VFGASNIIKF LQELPESQRT DAVNSMVYEA  120
GARMRDPVYG CAGAIYHLQR QVSELQAQLV KTQVELVSMQ LQRSDLLELL YKMEQTKLAA  180
QEQGQQNMSF ESSFESGDEF ISSPDEVTND LGFLEDNNNN NSSMSWWDPL WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-405515710112LOB family transfactor Ramosa2.1
5ly0_B2e-405515710112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.229140.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140905.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892990.0AC189299.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028K05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140905.11e-174PREDICTED: LOB domain-containing protein 11
SwissprotQ9SK081e-132LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A291LQZ01e-172A0A291LQZ0_BRARR; Transcription factor LBD11
TrEMBLA0A397ZLR91e-172A0A397ZLR9_BRACM; Uncharacterized protein
STRINGBra035698.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-108LOB domain-containing protein 11