PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009140961.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 722aa MW: 82252.8 Da PI: 6.7929

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140961.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362.3	6.9e-111	346	719	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+cA+avs +d+++a+ lL +++++s++gd ++Rla+yf++ L+arla++++++y al++++ts ++ l+a+++++ v+P+ k++ XP_009140961.1 346 LRSLLLSCAQAVSVNDHRRAEGLLRLVRQHSSSYGDGTERLAHYFANSLEARLAGTGTQVYTALSSKKTS---AADMLKAYQTYVSVCPFKKIGI 437 689*************************************************************9999...9***************** PP GRAS 96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + aN++I + v++ +++HiiDf+is+G+QW +L + La R++++ +lRiTg++ p+ g ++ + etg+rLak++++++vpfe+n+ +a+++ XP_009140961.1 438 VFANHTIQQLVKKTmpDTIHIIDFGISYGFQWHSLVHRLAWRRGSSCKLRITGIDLPQRGfrPANGVIETGHRLAKYCKKFNVPFEYNA-IAQKW 531 **********99**************************************9999***********************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 e+++le+L++k+gE +aVn+ ++ +llde+v+++s+rd vL+l+++++P++++ + ++n++ F++rf e l+++s+lfd+ +++l re+ XP_009140961.1 532 ETIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVDSPRDVVLRLIQKIKPNIFIPSILSGSYNAPFFVTRFREVLYHFSSLFDMCDTTLTREDPM 626 ******************************************************************************************* PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r++ E+e+ grei+nvvaceg++r+er e++++W+ r+ +aGF+++p++++ +++ +l++ k + s+++ v+++ +++++gWk+r +++ S+W XP_009140961.1 627 RVVFEKEFYGREIMNVVACEGTARVERPESYKQWQGRMVRAGFRQLPVEKELVQKLRLMVDKEYkSKEFDVDQDGNWFLQGWKGRLVYASSFW 719 ********************************************************9998899************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.909	320	699	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-108	346	719	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MGSYSAGFPG SFDNFHYNYK IDFSNFGNGL YLDDQPFLRS PSPFPPLPLP PLHPPPHPEP 60 CSQQNLPADA DVDADDDCTD SVLQYISQVL MEEDMDDKPC MFHDALSLQA AERSLYEALG 120 EKYPDSTRPV QLSHSPDELS DITSSGYTSR TTTTTTTSSD WSFDSLENSR PSWMQTPIPK 180 NFVFQSTPST RSSPNSGRNT GIRSSSSNDL VSNMFKDSSW ALQFKKGVEE ASKFLPKSTQ 240 LVIDVENDHH YVPYRITGEK YHWREDEHLP EERSKKQPAV YADDPELSEM FDKILLFGDP 300 KENPKCILNE TSQKEPPKAS PSPKGETTTY PRGQKPTAYV QEIPDLRSLL LSCAQAVSVN 360 DHRRAEGLLR LVRQHSSSYG DGTERLAHYF ANSLEARLAG TGTQVYTALS SKKTSAADML 420 KAYQTYVSVC PFKKIGIVFA NHTIQQLVKK TMPDTIHIID FGISYGFQWH SLVHRLAWRR 480 GSSCKLRITG IDLPQRGFRP ANGVIETGHR LAKYCKKFNV PFEYNAIAQK WETIKLEDLK 540 LKEGEFVAVN SLFRFRNLLD ETVAVDSPRD VVLRLIQKIK PNIFIPSILS GSYNAPFFVT 600 RFREVLYHFS SLFDMCDTTL TREDPMRVVF EKEFYGREIM NVVACEGTAR VERPESYKQW 660 QGRMVRAGFR QLPVEKELVQ KLRLMVDKEY KSKEFDVDQD GNWFLQGWKG RLVYASSFWV 720 SV

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MGSYSAGFPG SFDNFHYNYK IDFSNFGNGL YLDDQPFLRS PSPFPPLPLP PLHPPPHPEP  60
CSQQNLPADA DVDADDDCTD SVLQYISQVL MEEDMDDKPC MFHDALSLQA AERSLYEALG  120
EKYPDSTRPV QLSHSPDELS DITSSGYTSR TTTTTTTSSD WSFDSLENSR PSWMQTPIPK  180
NFVFQSTPST RSSPNSGRNT GIRSSSSNDL VSNMFKDSSW ALQFKKGVEE ASKFLPKSTQ  240
LVIDVENDHH YVPYRITGEK YHWREDEHLP EERSKKQPAV YADDPELSEM FDKILLFGDP  300
KENPKCILNE TSQKEPPKAS PSPKGETTTY PRGQKPTAYV QEIPDLRSLL LSCAQAVSVN  360
DHRRAEGLLR LVRQHSSSYG DGTERLAHYF ANSLEARLAG TGTQVYTALS SKKTSAADML  420
KAYQTYVSVC PFKKIGIVFA NHTIQQLVKK TMPDTIHIID FGISYGFQWH SLVHRLAWRR  480
GSSCKLRITG IDLPQRGFRP ANGVIETGHR LAKYCKKFNV PFEYNAIAQK WETIKLEDLK  540
LKEGEFVAVN SLFRFRNLLD ETVAVDSPRD VVLRLIQKIK PNIFIPSILS GSYNAPFFVT  600
RFREVLYHFS SLFDMCDTTL TREDPMRVVF EKEFYGREIM NVVACEGTAR VERPESYKQW  660
QGRMVRAGFR QLPVEKELVQ KLRLMVDKEY KSKEFDVDQD GNWFLQGWKG RLVYASSFWV  720
SV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-43	344	719	3	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140961.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140961.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	P0C883	0.0	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	M4F3K3	0.0	M4F3K3_BRARP; Uncharacterized protein
STRING	Bra035653.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein