PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141138.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 250aa    MW: 28893.1 Da    PI: 6.5101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd+ l+++++++G  +W++ +++ g+ R++k+c++rw +yl
   XP_009141138.1 14 RGPWTPEEDQTLINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding51.72.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
   XP_009141138.1  67 RGNFTPQEEQTIINLHEVLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.209961IPR017930Myb domain
SuperFamilySSF466897.75E-3110108IPR009057Homeodomain-like
SMARTSM007175.4E-151363IPR001005SANT/Myb domain
PfamPF002493.0E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251568IPR009057Homeodomain-like
CDDcd001672.10E-111661No hitNo description
PROSITE profilePS5129424.79262116IPR017930Myb domain
SMARTSM007174.1E-1466114IPR001005SANT/Myb domain
PfamPF002494.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2769117IPR009057Homeodomain-like
CDDcd001671.20E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRAPCCEKM GMKRGPWTPE EDQTLINYIH LYGHSNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPQEEQTIIN LHEVLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLNKNQ  120
NNGGDAKDIN GSNDTTHEDK EPVVVHTTSP QQFSNSTTTL DISDNNNKDD TMSHEDISAL  180
VDESFWSEVV SVDNSSNNEK KIEGWEGLLE RNSKRHSYNN SKLYNDDMEF WFDLFTSCRR  240
IEAFSDIPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121175109B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141138.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141138.10.0PREDICTED: myb-related protein Myb4
RefseqXP_013747195.10.0transcription factor MYB14-like
SwissprotQ9SJX81e-160MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A397ZV340.0A0A397ZV34_BRACM; Uncharacterized protein
TrEMBLM4DYW10.0M4DYW1_BRARP; Uncharacterized protein
STRINGBra021708.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-156myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]