PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141140.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 445aa    MW: 50402.7 Da    PI: 4.4951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11229273655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++Lq
  XP_009141140.1 229 FTTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINELQ 273
                     578*********************9.....79*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.53E-12221277No hitNo description
Gene3DG3DSA:4.10.280.104.1E-12221281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.056223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-14223289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-9227273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MYEDSSCFDL NPTLEATVDN NGGYYDSTTG TETDFTVSQQ FQPLVMIAGS TTNTFSDDLK  60
LPTMDEFSVF PSVVSSETQN QISNDNNHLI QQMIHDSNWA ASVDNYGFFM NPSDQNTTTT  120
PTPDLLSLLH LPKCSVPLQS SNLSDIMSGS CISYDPLFHL NLPPQPPVIL TADDYSGFFL  180
GTDTNITNTQ RDQQNLGDEN NNDQFDSGII EFSKNIRRKR RGKQKNKPFT TERERRCHLN  240
ERYEALKLLI PNPSKGDRAS ILQDGIDYIN ELQRRVSELK YLVERKRCGG RHKDNNEVDN  300
SNNNNLDDLN IVNDEDDEDD DDENMDKKTE SDVIDQCSSN NSLRCSWLQR KSKVTEVDVR  360
IVDDEVTIKV IQKRKINCLL VVTKVLDHLH LDLHHVSGGQ IGEHYSFLLN TKINEGSTIY  420
ASAIANKVIE VVDQHYMAAL PINNY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141140.10.0PREDICTED: transcription factor bHLH91-like
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLM4DYW30.0M4DYW3_BRARP; Uncharacterized protein
STRINGBra021710.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]