PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141142.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 265aa    MW: 29695.6 Da    PI: 4.7065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-17105154254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                      y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  XP_009141142.1 105 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 154
                     69*******.**********44465..*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.75E-29104164No hitNo description
Gene3DG3DSA:3.30.730.106.6E-29105164IPR001471AP2/ERF domain
SMARTSM003806.6E-36105169IPR001471AP2/ERF domain
PfamPF008472.0E-11105152IPR001471AP2/ERF domain
PROSITE profilePS5103221.931105163IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21105165IPR016177DNA-binding domain
PRINTSPR003674.7E-10106117IPR001471AP2/ERF domain
PRINTSPR003674.7E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEYSQSTMYS SPSSWSSSQE SFLWNESSFL DPSSNHQSFF SADYIYSDES NHQSFFCPND  60
NYSIDFFSFE SPEMMIKEET PNADVSNSEE EEEEKIGSVI DEEKSYRGVR KRPWGKFAAE  120
IRDSTRNGIR VWLGTFDKAE EAALAYDQAA FATKGSLAVL NFPVEVVRES LKKMENVNLE  180
DGGSPIMALK RKHSLRNRPR GKKRSSNSLS CSSSNSSSST SSSSSSSTSR SRNVKQCVVK  240
QESGTLVVFE DLGAEYLEQL LMSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-28104166163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141142.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141142.10.0PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM01e-116ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A397ZTP40.0A0A397ZTP4_BRACM; Uncharacterized protein
TrEMBLM4DYW50.0M4DYW5_BRARP; Uncharacterized protein
STRINGBra021712.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-98ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]