PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141169.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 239aa    MW: 26574.9 Da    PI: 4.7227
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-07443538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     C+ +e+ +++l C  ++  lC++C +e H        H+
  XP_009141169.1  4 QCDVCEKAPATLICCADEAALCASCDVEVHAAnklaskHQ 43
                    7*****************************6556666665 PP
2zf-B_box27.28.1e-095586435
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                    + C+ + ek + +fC +++ llC+dC +++H 
  XP_009141169.1 55 PPCDICLEKAAFIFCVEDRALLCRDCDEATHA 86
                    68*****************************4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.456147IPR000315B-box-type zinc finger
CDDcd000215.95E-7347No hitNo description
PfamPF006436.9E-6444IPR000315B-box-type zinc finger
SMARTSM003361.3E-9447IPR000315B-box-type zinc finger
SMARTSM003365.9E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501199.3435299IPR000315B-box-type zinc finger
PfamPF006431.9E-65595IPR000315B-box-type zinc finger
CDDcd000216.01E-75598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MKIQCDVCEK APATLICCAD EAALCASCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC  60
LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT GIRVALSSTS CSKEVEMNHF  120
DPPNQQILSK PTIQQSAAPS PPWAGDEFFR YSDLECSNKK EPLDLGELDW LSEMGFFGDQ  180
PDQEALPAAE VPELAVSHLA HVHSYNRPIK STNVSNKKPR LEIRYDDDDE QHFLVPDIG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.99130.0root
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529610.0AK352961.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141169.11e-178PREDICTED: B-box zinc finger protein 25-like isoform X2
SwissprotQ9SID11e-150BBX25_ARATH; B-box zinc finger protein 25
TrEMBLM4DYY71e-174M4DYY7_BRARP; Uncharacterized protein
STRINGBra021734.1-P1e-175(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.11e-143salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]