PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141174.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 180aa MW: 20265.7 Da PI: 4.7999

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.7	1.9e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp+++r da++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a++ XP_009141174.1 7 PCGACKFLRRKCIEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPDQDRCDAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVSLQAQV 101 7*********************9979***************************************************************** PP DUF260 95 allkee 100 +ll+ee XP_009141174.1 102 VLLREE 107 999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.593	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-35	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MGGLGSPCGA CKFLRRKCIE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDQD 60 RCDAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREEASR KFPQGDCSEQ 120 GEFLAQDTPQ DLHSWFHQVV SDSNLNQMSD VASTSIDHDE SLCRSNEFIY YQEVMFPWSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141174.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473850	1e-142	AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141174.1	1e-133	PREDICTED: LOB domain-containing protein 14-like
Refseq	XP_013747189.1	1e-133	LOB domain-containing protein 14-like
Refseq	XP_013747190.1	1e-133	LOB domain-containing protein 14-like
Swissprot	Q9SJW5	1e-101	LBD14_ARATH; LOB domain-containing protein 14
TrEMBL	A0A291LR53	1e-131	A0A291LR53_BRARR; Transcription factor LBD14a
STRING	Bra021737.1-P	1e-122	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31310.1	1e-85	LOB domain-containing protein 14

Publications ? help Back to Top
Jeon E, et al. LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis. Plant Cell Physiol., 2017. 58(12): p. 2190-2201 [PMID:29040694]