PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141469.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 216aa MW: 23116.8 Da PI: 9.867

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.3	6.4e-39	11	176	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....... 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + +s +s+ + + XP_009141469.1 11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvS--ASLRGNSTTT-Tncslsss 102 79*************************************************************99999777331..2222222122.12445566 PP TCP 89 ............................................kaaksaakskksqksaasalnlak.esraka 118 + a++++ +++q++aa l +++ +++++a XP_009141469.1 103 ldqkpmlgsspfilgkrvradedtpsgfwavparqefgqvwsfaAGATQEMLLQQQQQQAA-GLFVHQqQQQQQA 176 6677788888999999999999999999999999999999998644555555555555555.3444441333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	16	70	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.9E-34	16	171	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL 60 RQAEPSIIAA TGTGTTPASF STVSASLRGN STTTTNCSLS SSLDQKPMLG SSPFILGKRV 120 RADEDTPSGF WAVPARQEFG QVWSFAAGAT QEMLLQQQQQ QAAGLFVHQQ QQQQQAAMGE 180 ASAARVGNYL PGHLNLLASL SSGAPGSGRG EDDDQR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.19630	0.0	bud\| flower\| root\| silique

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141469.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141469.1	1e-158	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-102	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A397XT27	1e-157	A0A397XT27_BRACM; Uncharacterized protein
TrEMBL	M4ECJ6	1e-157	M4ECJ6_BRARP; Uncharacterized protein
STRING	Bra026506.1-P	1e-158	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-58	TCP family protein