PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141496.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 185aa    MW: 20229 Da    PI: 4.6697
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.47.3e-14971402063
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  20 sRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     +R+RK+ae++eL++++++L +eN +L++e+++l+ ++++l+se+
  XP_009141496.1  97 YRLRKQAECDELAQRAEVLNEENASLREEINKLRSQCEELTSEN 140
                     7*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.0E-489142IPR004827Basic-leucine zipper domain
PfamPF001701.4E-1197140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.6E-897136No hitNo description
CDDcd147028.08E-1098133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MELTLKVGRV LLMVQVKEVM QTLKIPLYNS GSGGSANGPR DGSVGCQTVP VMPMTAAGVP  60
APPTNLNIGV LLLQHLHQFM ESLLQCHEMV AVHSLGYRLR KQAECDELAQ RAEVLNEENA  120
SLREEINKLR SQCEELTSEN NSLKDQLLSF PTLEGVAMDK DEQEPPDTNQ TGVAETKADS  180
SKDSK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410711.13e-55bZIP transcription factor 16 isoform X1
RefseqXP_024004269.13e-55bZIP transcription factor 16 isoform X1
RefseqXP_024004270.13e-55bZIP transcription factor 16 isoform X2
SwissprotQ501B25e-54BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A078HPI73e-79A0A078HPI7_BRANA; BnaA04g20520D protein
STRINGBra017316.1-P7e-77(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-56basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]