PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141508.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 194aa MW: 21455.1 Da PI: 7.1645

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.3	1.6e-17	55	104	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g XP_009141508.1 55 TFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTAEKAARAHDVAALAIKG 104 59**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.945	55	112	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-32	55	113	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-21	55	113	IPR016177	DNA-binding domain
SMART	SM00380	6.7E-39	55	118	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	56	67	IPR001471	AP2/ERF domain
CDD	cd00018	7.38E-34	56	114	No hit	No description
Pfam	PF00847	2.0E-11	56	104	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	78	94	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MDHSSSSESH PDDCPRIFQD LPAQATAERT VNSNNPKKKR VKKDNDEKAV SKPPTFRGVR 60 MRQWGKWVSE IREPRKKSRI WLGTFSTAEK AARAHDVAAL AIKGRSAHLN FPELAYHFPR 120 PASANPKDIQ AAAAAAAAVA VDIEVETSLP SPAMTAIADD AFSDLPDLLL DVNHKLDGFW 180 DSLPYEEPFF TGSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-16	56	112	15	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	42	PKKKRVKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.25612	0.0	flower

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141508.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141508.1	1e-141	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q9ZQP3	2e-80	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	M4DLC1	1e-140	M4DLC1_BRARP; Uncharacterized protein
STRING	Bra017302.1-P	1e-141	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	1e-79	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]