PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141579.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 396aa MW: 45266 Da PI: 4.2671

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	90.2	2.4e-28	56	150	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++ w+++De+++L ++d++++t+ s +d+ afy +vk+ i++++sk+ql++Kir+L k+f +++++ ++++ psf+ ++d+ if+ls +iW+ XP_009141579.1 56 NKMNWTKDDELIILGSIVDYEKETKLSHRSDWYAFYGYVKDFIEAEFSKKQLTDKIRNLNKRFLGNKARCDDEEGPSFTDTEDDIIFKLSVIIWD 150 5799******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.6E-22	58	150	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MVLGKRTREH STDSNDKPIS SSPLRKMQED DVSGVESMLR RRKQPKTTPV SSSSNNKMNW 60 TKDDELIILG SIVDYEKETK LSHRSDWYAF YGYVKDFIEA EFSKKQLTDK IRNLNKRFLG 120 NKARCDDEEG PSFTDTEDDI IFKLSVIIWD STNETVCDSD ENVDQGKVDA PCVEHEKVSE 180 SNMDQAKDVP CVEHERVDEN IEQAKDAPLV EHERVDENME QEKDVPCVEH EPVDENMDPA 240 KVDLPCVEDE RVDKNVDQGK VLDLDKDAPA VEHEPTNENM DLDQEKDALT DKDNNEEDGV 300 DEFCAMKDAL ADKEKSEEDS ADEYCALKDA LEETTFFQSI GKYQQKALLQ NLKNLRGPRR 360 KELADELKDL LDEEMKVRGK KLSLSAKLAS AWEESC

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MVLGKRTREH STDSNDKPIS SSPLRKMQED DVSGVESMLR RRKQPKTTPV SSSSNNKMNW  60
TKDDELIILG SIVDYEKETK LSHRSDWYAF YGYVKDFIEA EFSKKQLTDK IRNLNKRFLG  120
NKARCDDEEG PSFTDTEDDI IFKLSVIIWD STNETVCDSD ENVDQGKVDA PCVEHEKVSE  180
SNMDQAKDVP CVEHERVDEN IEQAKDAPLV EHERVDENME QEKDVPCVEH EPVDENMDPA  240
KVDLPCVEDE RVDKNVDQGK VLDLDKDAPA VEHEPTNENM DLDQEKDALT DKDNNEEDGV  300
DEFCAMKDAL ADKEKSEEDS ADEYCALKDA LEETTFFQSI GKYQQKALLQ NLKNLRGPRR  360
KELADELKDL LDEEMKVRGK KLSLSAKLAS AWEESC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141579.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141579.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X1
TrEMBL	M4DL63	0.0	M4DL63_BRARP; Uncharacterized protein
STRING	Bra017244.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	3e-61	DNA-binding storekeeper protein-related transcriptional regulator