PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141580.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 395aa    MW: 45166.8 Da    PI: 4.2671
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57390.22.4e-2856150397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                      ++ w+++De+++L  ++d++++t+ s  +d+ afy +vk+ i++++sk+ql++Kir+L k+f +++++ ++++ psf+ ++d+ if+ls +iW+
  XP_009141580.1  56 NKMNWTKDDELIILGSIVDYEKETKLSHRSDWYAFYGYVKDFIEAEFSKKQLTDKIRNLNKRFLGNKARCDDEEGPSFTDTEDDIIFKLSVIIWD 150
                     5799******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.6E-2258150IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVLGKRTREH STDSNDKPIS SSPLRKMQED DVSGVESMLR RRKQPKTTPV SSSSNNKMNW  60
TKDDELIILG SIVDYEKETK LSHRSDWYAF YGYVKDFIEA EFSKKQLTDK IRNLNKRFLG  120
NKARCDDEEG PSFTDTEDDI IFKLSVIIWD STNETVCDSD ENVDQGKVDA PCVEHEKVSE  180
SNMDQAKDVP CVEHERVDEN IEQAKDAPLV EHERVDENME QEKDVPCVEH EPVDENMDPA  240
KDLPCVEDER VDKNVDQGKV LDLDKDAPAV EHEPTNENMD LDQEKDALTD KDNNEEDGVD  300
EFCAMKDALA DKEKSEEDSA DEYCALKDAL EETTFFQSIG KYQQKALLQN LKNLRGPRRK  360
ELADELKDLL DEEMKVRGKK LSLSAKLASA WEESC
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of rosette leaves, in primary and secondary roots and at the base of flowers and siliques. {ECO:0000269|PubMed:18162594}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141580.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X2
SwissprotQ9SJM41e-81STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLM4DL630.0M4DL63_BRARP; Uncharacterized protein
STRINGBra017244.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.13e-62DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]