PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141626.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 176aa    MW: 19411.6 Da    PI: 6.9467
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.85.7e-5726122197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimk+ lPan+ki+kdake++qecvsefisfvtseasdkcqrekrktingddllwa+atlGfe+y+eplk+yl++yre+eg
  XP_009141626.1  26 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEILQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEEYIEPLKLYLTRYREMEG 120
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  XP_009141626.1 121 DS 122
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5322144IPR009072Histone-fold
SuperFamilySSF471131.65E-4029148IPR009072Histone-fold
PfamPF008083.1E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-216078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-217997No hitNo description
PRINTSPR006151.7E-2198116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAESQTKSPG DHVSGGDQSP RSSSHVREQD RFLPIANISR IMKRGLPANG KIAKDAKEIL  60
QECVSEFISF VTSEASDKCQ REKRKTINGD DLLWAMATLG FEEYIEPLKL YLTRYREMEG  120
DSKGSARGGD IANAKRDGQS SQNGQFSQLA HQGSYPQGPY GNSQAQHMMV PMPGTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4627117393NF-YB
4awl_B9e-4727117494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4727117494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B9e-4726117192Transcription factor HapC (Eurofung)
4g92_B9e-4726117192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.37090.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141626.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141626.11e-130PREDICTED: nuclear transcription factor Y subunit B-8-like
SwissprotQ8VYK41e-106NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A397ZND81e-129A0A397ZND8_BRACM; Uncharacterized protein
STRINGBra017209.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-108nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]