PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141657.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 180aa    MW: 20389.6 Da    PI: 9.8414
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294971123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+Fs+   L  H  +H
  XP_009141657.1 49 FECKTCNKRFSSFQALGGHRASH 71
                    89**********99999998887 PP
2zf-C2H216.52.4e-0595117123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+sF +   L  H+r+H
  XP_009141657.1  95 HECTICGQSFGTGQALGGHMRRH 117
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-124873IPR007087Zinc finger, C2H2
SuperFamilySSF576675.75E-948117No hitNo description
PROSITE profilePS5015710.5334976IPR007087Zinc finger, C2H2
SMARTSM003550.0934971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-581118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.3E-1294119IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.47195122IPR007087Zinc finger, C2H2
SMARTSM003550.0195117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MMKRERSEFE ESIKNLDISK CLMILSQTSS MVKQIGVNQY TETNTSNRFE CKTCNKRFSS  60
FQALGGHRAS HKKPKLTVDQ KVVKQYLTKD GTQAHECTIC GQSFGTGQAL GGHMRRHRSS  120
MTVEPSELIS PVIHNMPVLK RCSSSKRVLS LDLNLTPLEN DLEILFGKTF FPNIDMKFVV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141657.11e-133PREDICTED: zinc finger protein ZAT11-like
RefseqXP_013747338.11e-133zinc finger protein ZAT11
SwissprotQ9SLD41e-100ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A078FZH21e-131A0A078FZH2_BRANA; BnaA04g21410D protein
TrEMBLA0A397ZNQ81e-131A0A397ZNQ8_BRACM; Uncharacterized protein
TrEMBLM4DL071e-131M4DL07_BRARP; Uncharacterized protein
STRINGBra017188.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-103C2H2 family protein