PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141902.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 258aa MW: 29377.3 Da PI: 6.5094

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	25	4.7e-08	15	54	4	43
HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH CS HSF_DNA-bind 4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpk 43 ++lye ++d++ +++ wse+g+sf+v de ef k vLp+ XP_009141902.1 15 SRLYETVNDPSKASIVAWSESGKSFIVGDEVEFRKAVLPR 54 689***********************************97 PP
2	HSF_DNA-bind	46.8	8e-15	139	219	2	88
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 F++ +y++++d+++++++sw e+g+sf+v++e+ef ++vLp+ F + ++S++ L+ g++kv+++e+ we++ +++ + XP_009141902.1 139 FIRGVYDMVDDPSTDSVVSWGESGKSFIVWNETEFLRDVLPNclPFDYKDMTSLTTWLHAIGYSKVEESEH--------WEYTADYLVR 219 9999************************************656*******************99984........6666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.3E-4	9	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	7.9E-8	11	54	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.99E-8	13	83	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.0E-6	15	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.2E-18	132	222	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.3E-12	135	222	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.3E-15	136	222	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.0E-13	139	222	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDCDSNRGLI AYYRSRLYET VNDPSKASIV AWSESGKSFI VGDEVEFRKA VLPRECLVHL 60 GFSQSHEQCE YACPYFMRGQ PDLKPSSQDK LIRKIETNNK GLNDGRIRFS SLSCYKEICR 120 LAKKERPPSS SIRRPPPLFI RGVYDMVDDP STDSVVSWGE SGKSFIVWNE TEFLRDVLPN 180 CLPFDYKDMT SLTTWLHAIG YSKVEESEHW EYTADYLVRG QPLPPNDTSP CTPGGLMITP 240 ELARIIERSF ASPKALKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141902.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189596	0.0	AC189596.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014A02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141902.1	0.0	PREDICTED: uncharacterized protein LOC103865804
TrEMBL	M4DKG5	0.0	M4DKG5_BRARP; Uncharacterized protein
STRING	Bra016994.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13231	11	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18870.1	3e-27	HSF family protein