PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141921.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 342aa MW: 38383.3 Da PI: 6.4567

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.5e-11	132	189	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se XP_009141921.1 132 KRAKRIMANRQSAARSKERKARYIMELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 189 9*****************************************9999887776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-16	128	192	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.76	130	193	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-10	132	183	No hit	No description
Pfam	PF00170	1.6E-9	132	190	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.2E-11	132	186	No hit	No description
CDD	cd14703	1.15E-23	133	182	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDDPSNAKSN QCPPPTSTPF RGPYHRRAHS EVQFRLPEDL DLSEPFGGFE DLGSEDDLFC 60 SYMDIEKLGS GSDSAGPSAL RSDNPFPEAG DSRPRHRPSL SVDGGSSTLE SIEAKKAMAP 120 DKLAELWVVD PKRAKRIMAN RQSAARSKER KARYIMELER KVQTLQTEAT TLSAQLSLFQ 180 RDTTGLSSEN TELKLRLQVM EQQAKLRDAL NDQLKKEVER LKFATGEVSH ADAYNLQMSH 240 MQYSQQPQQQ SFFQHHHQQQ QQADAQNLQQ MTHQFHLFQP NNNQNPQLMH HATSNSSGQS 300 HSFAEAMHED HLGRLQGLDI SSCGRGSNFG RSDTVSESSS TM

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDDPSNAKSN QCPPPTSTPF RGPYHRRAHS EVQFRLPEDL DLSEPFGGFE DLGSEDDLFC  60
SYMDIEKLGS GSDSAGPSAL RSDNPFPEAG DSRPRHRPSL SVDGGSSTLE SIEAKKAMAP  120
DKLAELWVVD PKRAKRIMAN RQSAARSKER KARYIMELER KVQTLQTEAT TLSAQLSLFQ  180
RDTTGLSSEN TELKLRLQVM EQQAKLRDAL NDQLKKEVER LKFATGEVSH ADAYNLQMSH  240
MQYSQQPQQQ SFFQHHHQQQ QQADAQNLQQ MTHQFHLFQP NNNQNPQLMH HATSNSSGQS  300
HSFAEAMHED HLGRLQGLDI SSCGRGSNFG RSDTVSESSS TM

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141921.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074269	1e-177	AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	AY096746	1e-177	AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	Z86093	1e-177	Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141921.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	0.0	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	M4DKF1	0.0	M4DKF1_BRARP; Uncharacterized protein
STRING	Bra016980.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-172	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]