PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142039.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 581aa    MW: 64618.8 Da    PI: 9.9908
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-111365147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                     ++ W t+E++ll++av+++G+++W +++++++        +t+  c++++ ++
   XP_009142039.1 13 KQTWGTWEELLLACAVHRHGTESWPSVSAEIQkrtrnlSSLTASACRHKYSDL 65
                     789*****************************988888888888999998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.34E-5968IPR009057Homeodomain-like
SMARTSM007171.4E-51268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-41249IPR009057Homeodomain-like
PfamPF002492.8E-111365IPR001005SANT/Myb domain
CDDcd001675.75E-51562No hitNo description
SMARTSM002977.4E-13228339IPR001487Bromodomain
SuperFamilySSF473702.75E-15231337IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.5E-13237348IPR001487Bromodomain
PfamPF004399.3E-10243324IPR001487Bromodomain
CDDcd043698.81E-14245334No hitNo description
PROSITE profilePS5001411.146247320IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MAKPENDDVS PEKQTWGTWE ELLLACAVHR HGTESWPSVS AEIQKRTRNL SSLTASACRH  60
KYSDLKRRFT QEMTSPESEI SSVPWLEKLR RIRVDELRRE VERYDLSISS LRSKVKRLEE  120
ETSSHLDKKE LRRESDRDGG ELVPISPDPV DISSEMAGAV DGGGEAKLTE DDSCRGSCEK  180
ESGVNSERRI RLTESMAESE GGVNRGEEEG KETSDVQSSA SLPRKGTSEV DNEDRSQPSI  240
SFVEMLLSHP CGYLFSRRLE TQLQETPEYG KIIRQHVDFE MIRKLDEEGL YKSSMTKLFR  300
DLLLLINNAK VFYHKGSSEF NSAEQLHQLV KKQMATTLQR ELPPPKEKSL ELVSFKEAVA  360
VTSKPRISLP IVACGKRSSL ASKPLLMISP SGGDKKGKKT DQVVDDEKLV LLKDEETSGK  420
DDESLVLRKM VRGKTSTAKK VVTRNVKNSG SSLNEVKTTD EEKKGNQSGS SKRKSVANFL  480
KRMKGGGSSS DTVVETLMPS SEQKKNNIRK ADAKKRATGE NKTNEKASPV KKKNNGRALK  540
GEAAPSSSSP VVAKRSRESG EKKEASSSSP SSTRSKKRAR R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.211240.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142039.10.0PREDICTED: uncharacterized protein LOC103865927 isoform X1
TrEMBLM4DK650.0M4DK65_BRARP; Uncharacterized protein
STRINGBra016893.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.10.0DNA-binding bromodomain-containing protein