PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009142185.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 200aa MW: 23525 Da PI: 9.1895

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009142185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.8	2.4e-25	24	112	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+r+g+i r+f C+ke + + + k r++r++tr gCka+++vk +++gkw+vtk+++eHnH+l+ XP_009142185.1 24 FYDDYSRSLGFVMRVMSCRRSERDGRILARRFGCNKEVRCVSVRGKYGPVRKPRQSTREGCKAMVHVKYDRSGKWVVTKFVKEHNHPLV 112 9***********************************9999888889*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-23	24	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MEDDLTIEPR EGTEFESEEA AKMFYDDYSR SLGFVMRVMS CRRSERDGRI LARRFGCNKE 60 VRCVSVRGKY GPVRKPRQST REGCKAMVHV KYDRSGKWVV TKFVKEHNHP LVVEPRQARQ 120 SLDEKDKRIQ ELTIELRNKK RLCAAYKEQL DAFAKIVEEY SNRMSKRVES VVENLKEFEH 180 IELELLCSKQ DAIYKPALNV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.9343	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009142185.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018513707.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	2e-23	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M4F9G0	1e-145	M4F9G0_BRARP; Uncharacterized protein
STRING	Bra037723.1-P	1e-146	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-121	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]