PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142249.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 257aa    MW: 28864.1 Da    PI: 8.1257
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95e-1519113199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l  +d +++++  +p++f ++ + k   + ++tl+  +g sW v+l  +   g   + +kGW+eF ++n+L +++f++F+ +g+++   +v
  XP_009142249.1  19 FFKILADEDLSSESMRLIPNEFWRSSECK-ILPPKVTLKVAWGSSWPVNL--SPFMGCyLMERKGWEEFLNDNHLGDNEFLTFTNEGNNCI--TV 108
                     99*********************998443.45668***************..66665525666*********************6666665..88 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                      +f+k
  XP_009142249.1 109 DIFQK 113
                     88876 PP
2B350.92.7e-161732521196
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     + + +l++p +fa+eh+ k  + ++ ++ d++g+ Wev +    + g+ ++++GW+  ++  gL +gD ++F+l++   +e+v+ v
  XP_009142249.1 173 SHLTLLSIPVTFAKEHMPK-VR-TKFVIHDPKGKPWEVVY--VPSNGSKLFSSGWRFLANGYGLAVGDLCTFRLVRP--KEMVLEV 252
                     445679**********644.33.58***************..9999999************************9874..3345555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1615115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1615115IPR015300DNA-binding pseudobarrel domain
CDDcd100179.82E-1418111No hitNo description
SMARTSM010194.6E-1319114IPR003340B3 DNA binding domain
PfamPF023621.9E-1319113IPR003340B3 DNA binding domain
PROSITE profilePS5086312.32319114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-20157254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-20159254IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.816163256IPR003340B3 DNA binding domain
SMARTSM010193.0E-14166256IPR003340B3 DNA binding domain
CDDcd100171.33E-13166253No hitNo description
PfamPF023622.2E-13171249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MARNIAFGRI QEDVNKTSFF KILADEDLSS ESMRLIPNEF WRSSECKILP PKVTLKVAWG  60
SSWPVNLSPF MGCYLMERKG WEEFLNDNHL GDNEFLTFTN EGNNCITVDI FQKNCVEILK  120
PLNTSSSNVK NEEMSCVDPV IAESNKRKVD SNVYGASSSS SSAATFSLTI KKSHLTLLSI  180
PVTFAKEHMP KVRTKFVIHD PKGKPWEVVY VPSNGSKLFS SGWRFLANGY GLAVGDLCTF  240
RLVRPKEMVL EVLHASP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142249.10.0PREDICTED: B3 domain-containing protein At5g18090-like
TrEMBLA0A397ZXJ50.0A0A397ZXJ5_BRACM; Uncharacterized protein
TrEMBLM4F9A00.0M4F9A0_BRARP; Uncharacterized protein
STRINGBra037663.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.11e-52B3 family protein