PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142333.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 168aa    MW: 18604.4 Da    PI: 7.8922
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.36e-39181181100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf aeq +++fa++hk+FGasn +k+l +lp ++r da+++l yeA ar+rdPvyG+vg++++lq+q+++l+ae+
  XP_009142333.1  18 PCGACKFLRRKCVSGCVFAPYFDAEQgTASFAAIHKVFGASNTSKMLLRLPLHKRLDAVATLGYEALARVRDPVYGCVGHLFSLQHQVMNLQAEI 112
                     7***********************9988******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_009142333.1 113 AHVQAR 118
                     *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.25417119IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3718116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MMTTNLNGGG RGGGGEGPCG ACKFLRRKCV SGCVFAPYFD AEQGTASFAA IHKVFGASNT  60
SKMLLRLPLH KRLDAVATLG YEALARVRDP VYGCVGHLFS LQHQVMNLQA EIAHVQARLS  120
MFQRFYLVPP QQMQQPPFDL AYNNEYPMEP TNLDVGWEEE QLPQAVRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-38141167110LOB family transfactor Ramosa2.1
5ly0_B7e-38141167110LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1814GGRGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-113AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142333.11e-124PREDICTED: LOB domain-containing protein 19-like
SwissprotO221323e-82LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A291LR631e-123A0A291LR63_BRARR; Transcription factor LBD19a
TrEMBLM4FGT41e-123M4FGT4_BRARP; Uncharacterized protein
STRINGBra040312.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-85LOB domain-containing protein 19