PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142335.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 217aa    MW: 25159.1 Da    PI: 4.9409
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-1958110557
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqN+Ra++k+
  XP_009142335.1  58 RNLPDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNHRARWKN 110
                     477789*********************************************95 PP
2HD-ZIP_I/II118.73.1e-3856146292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kr l +eqv++LE+sF  e+kLe+erK +la eLgl+prqvavWFqn+RAR+k+k+lE++y++Lk+++d+++ +++rLe+e  +L+e+l 
  XP_009142335.1  56 RKRNLPDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNHRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESELLQLKEQLY 146
                     89**************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.3E-1854115IPR001356Homeobox domain
PROSITE profilePS5007115.49956111IPR001356Homeobox domain
CDDcd000862.05E-1556112No hitNo description
SuperFamilySSF466893.72E-1757121IPR009057Homeodomain-like
PfamPF000461.9E-1658110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-1959118IPR009057Homeodomain-like
PRINTSPR000312.5E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000312.5E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MNHTLDDQNM AFISQLYPDI YTQIVPQQGE VKPPKRRRKK SKVAVASGDG SNCLFRKRNL  60
PDEQVNMLEM SFGDEHKLES ERKDKLAAEL GLDPRQVAVW FQNHRARWKN KRLEEEYNKL  120
KNSHDNVVVD KCRLESELLQ LKEQLYDAER EIQRLAERIE GGSSNSPVSS SVSVEANETP  180
FFGDYKVGDD GDDYNNLFYP VPENIYIDGA EWMNLYI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.3526e-43bud| flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142335.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-126AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142335.11e-162PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-132ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A398ANQ71e-157A0A398ANQ7_BRACM; Uncharacterized protein
STRINGBo1g005450.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-99homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]