PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142421.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 459aa    MW: 51300.6 Da    PI: 5.0395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14303349455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ Le A+ YIk+Lq
  XP_009142421.1 303 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLEDAISYIKELQ 349
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-4846227IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.31E-18298359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.15E-16302353No hitNo description
PfamPF000104.7E-12303349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17303362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MNDLGWDEEE TSMANAILGN SASDFLKTIS SSNQNLFLLM ETDDSLNKKL SSLVEWPNSE  60
NFSWNYAILW QQTVSRSGHR VLGWGDGCCR EPKEEESSVC NCPSSTLEEE EMRKRVLQNL  120
QRVFGESDED NYALSLERVT ATETFFLASM YFFFNHGEGG PGKCFASGRH VWWVDSGDDY  180
CFRSFMARSA GIRTVVMVNT EVGVVELGSV WSLPENLELV KSVQSLFTRR AEPPLVVHKL  240
FGQELNVVGS STNNQLRKSD SCNENRPVSL LAVGGGGGGC VVEEKRPKKR GRKPANGREE  300
PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLED AISYIKELQE RVKIIEAEGV  360
RRESTEVEIQ AVEEEVVVRV ISPLETHPVS RIVQAMRNSE VSVMESKLSS AEETVFHTFV  420
VRSSNGSDPL TREKLIAAAA AYPQQPLVPS HSSQVSGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27297385283Transcription factor MYC2
5gnj_B2e-27297385283Transcription factor MYC2
5gnj_E2e-27297385283Transcription factor MYC2
5gnj_F2e-27297385283Transcription factor MYC2
5gnj_G2e-27297385283Transcription factor MYC2
5gnj_I2e-27297385283Transcription factor MYC2
5gnj_M2e-27297385283Transcription factor MYC2
5gnj_N2e-27297385283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284292KRPKKRGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In seedlings, mainly expressed in root tips, cotyledons, hypocotyls, and leaves, as well as its guard cells. In adult plant, detectable in stems, flowers, and siliques. {ECO:0000269|PubMed:17828375}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142421.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142421.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY81e-125AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLM4FDV80.0M4FDV8_BRARP; Uncharacterized protein
STRINGBra039279.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-119ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]